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MFG: Multi-turn Feedback Guided Molecular Optimization with LLMs

Forum topic · 小凯 · 2026-10-15

Summary

MFG (Multi-turn Feedback Guided) molecular optimization is a reinforcement learning framework that trains a large language model to progressively optimize molecules across multiple rounds using feedback from previous turns. Multi-objective molecular optimization, a key step in drug discovery, seeks to improve several molecular properties simultaneously while keeping the overall structure similar, typically through iterative modification guided by computational or experimental feedback. Existing LLM-based methods were not explicitly trained to exploit such feedback and mostly target single-turn optimization. MFG addresses this gap by introducing feedback vectors that capture both property improvement and similarity to the source molecule, combined with a feedback-aligned reward function that encourages progressive improvement across turns. Applied to GeLLM3O, a state-of-the-art LLM for multi-objective molecular optimization, the resulting GeLLM3O-MFG model was evaluated on ten multi-objective optimization tasks and achieved the highest average similarity-constrained success rate of 81.50%, surpassing the base GeLLM3O model's 70.81%. Paper: arXiv 2610.18851.

Paper Overview

Field: Machine Learning Authors: Trieu Nguyen, Frazier N. Baker, Ruoxi Gao, Daniel Adu-Ampratwum, Xia Ning Published: 2026-10-13 arXiv: 2610.18851

Summary

Multi-objective molecular optimization is a critical process in drug discovery that aims to modify a given molecule to simultaneously improve multiple properties while maintaining a similar overall structure. This process often requires iterative modifications guided by computational or experimental feedback. Recent large language model (LLM)-based methods have begun to explore this iterative approach; however, these methods are not explicitly trained to leverage such feedback, while existing approaches primarily focus on single-turn molecular optimization.

Key Contributions

  • MFG framework: a reinforcement learning framework that trains an LLM to progressively optimize molecules using feedback from previous turns.
  • Feedback vectors: capture both property improvement and similarity to the source molecule.
  • Feedback-aligned reward: a reward function promoting progressive improvement across turns.
  • Results

    Applied to GeLLM3O, a state-of-the-art multi-objective molecular optimization LLM, the resulting GeLLM3O-MFG was evaluated on ten multi-objective tasks and achieved the highest average similarity-constrained success rate of 81.50%, surpassing the base GeLLM3O model (70.81%).

    Links

  • Paper: https://arxiv.org/abs/2610.18851
--- *Auto-collected on 2026-10-15*

Tags

#molecular-optimization#reinforcement-learning#large-language-models#drug-discovery#multi-objective-optimization#arxiv#machine-learning

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