Verdict
🔴 Confirmed concerns — The report identifies multiple serious issues, most notably apparent image duplication in Figure 4A/4E and a severe cross-species/cross-cell-type methodological contradiction in the RNA-seq description. These findings collectively raise strong doubts about data integrity and warrant formal institutional investigation.
Key findings
- Image reuse in Figure 4A and 4E: AM/PI staining images for EC cells (Figure 4A) and HBMSCs (Figure 4E) at 0h, 24h, and 48h across Control, NBP, and CeSNs groups display highly similar or near-identical background textures and cell distribution patterns, inconsistent with independent experimental replicates.
- Methods/Results contradiction in RNA-seq: The Results section states RNA-seq was performed on human HBMSCs (human bone marrow mesenchymal stem cells) treated with 6 Gy and 6 Gy+NBP@CeSNs (Page 2367), while the Methods "RNA sequencing" subsection (Page 2372) states: "Total RNA was extracted from ECs... Cleaned reads were aligned to the mouse reference genome (GRCm38) using HISAT2." This contradiction between cell type (HBMSCs vs ECs) and species (human vs mouse) strongly suggests an unedited copy-paste from another paper's Methods.
- Possible over-manipulation of Figure 5C: HSP60/LC3 immunofluorescence images in EC cells across Control, 6 Gy, and 6 Gy+NBP groups show highly similar noise patterns and cellular outlines, suggestive of repeated use with brightness adjustment.
- Statistical chart visual anomaly in Figure 6A: Transwell migration crystal violet staining images show unnaturally uniform and regular cell cluster morphology, inconsistent with the expected randomness of migration assays.
- DOI: 10.1007/s11427-025-3104-4
- Figure 4A (EC cells) AM/PI staining at 0, 24, 48 h under Control, NBP, CeSNs groups — visual duplication with Figure 4E
- Figure 4E (HBMSC cells) AM/PI staining at 0, 24, 48 h — background textures and cell positions closely match those of Figure 4A
- Page 2367 (Results): RNA-seq performed on HBMSCs treated with 6 Gy and 6 Gy+NBP@CeSNs
- Page 2372 (Methods): "Total RNA was extracted from ECs... aligned to the mouse reference genome (GRCm38) using HISAT2"
- Figure 5C: HSP60/LC3 dual immunofluorescence in ECs under Control, 6 Gy, 6 Gy+NBP — similar noise pattern across groups
- Figure 6A: Transwell migration assay images — uniform, textbook-like cell distribution
- Findings 1 and 2 are based on direct textual and figure-caption evidence in the published article and are considered reliable.
- Findings 3 and 4 are based on visual assessment; raw, unprocessed images would be required for conclusive determination.
- The cross-species genome alignment contradiction (human HBMSCs aligned to mouse GRCm38) is particularly damaging: it not only indicates a copy-paste error but also raises fundamental questions about the validity of any RNA-seq results.
- Recommended actions: request raw FASTQ files for RNA-seq and unprocessed original images for Figures 4, 5, and 6 from the authors; post concerns on PubPeer; report to the journal editorial office and to the institutional research integrity committee (Nanjing Medical University affiliation noted).